Maggot - Metadata

Metadata management - INRAE UMR 1332 BFP / Bordeaux Metabolome

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frim1

DESCRIPTION

The project aimed to build a virtual tomato fruit that enables the prediction of metabolite levels given genetic and environmental inputs, by an iterative process between laboratories which combine expertise in fruit biology, ecophysiology, theoretical and experimental biochemistry, and biotechnology.

DEFINITION

Full title	Subject
FRIM - Fruit Integrative Modelling	Computer and Information Science Medicine Health and Life Sciences

STATUS

Status of the dataset	Access rights to data	Language	Life cycle step	License
Processed	Public	English	Study design Data collection	Etalab V2.0 license

MANAGEMENT

Contacts	Authors	Data collectors	Data curators
Gibon Yves	Bénard Camille Biais Benoit Beauvoit Bertrand Colombié Sophie	Bénard Camille Biais Benoit Ballias Patricia Maucourt Mickaël	Moing Annick Jacob Daniel

Project leader	WP leader	Depositor	Producer	Grant Information
Gibon Yves	Vercambre Gilles	Jacob Daniel	Bordeaux Metabolome	MetaboHub Phenome

DESCRIPTORS

Kind of Data	Keywords	Topic Classification	Data origin	Experimental Factor
Dataset	tomato fruit growth experimental measurement plant trait	fruit growth plant health omics computer analysis	experimental data	fruit development stage plant treatment response to water response to stress

Measurement type	Technology type	Publication - Citation	Publication - ID Type	Publication - ID Number
metabolite biochemical composition enzyme activity lipid Metabolism plant trait	NMR spectroscopy assay liquid chromatography mass spectrometry assay	Biais B, Bénard C, Beauvoit B, Colombié S, Prodhomme D, Ménard G, Bernillon S, Gehl B, Gautier H, Ballias P, Mazat J-P, Sweetlove L, Génard M, Gibon Y. 2014. Remarkable reproducibility of enzyme activity profiles in tomato fruits grown under contrasting environments provides a roadmap for studies of fruit metabolism. Plant Physiology 164, 1204-1221	doi	10.1104/pp.113.231241

Publication - URL
https://doi.org/10.1104/pp.113.231241

RESOURCES

Type	Description	Location
Collection	ODAM dataexplorer	https://pmb-bordeaux.fr/dataexplorer/?ds=frim1
Other	Dataset's structural metadata	https://identifiers.org/odam:frim1
Other	metadata	datapackage.json
Other	README	README.txt
JournalArticle	Beauvoit et al (2014) Plant Cell 26: 3224–3242	https://doi.org/10.1105/tpc.114.127761
JournalArticle	Bénard et al (2015) Journal of Experimental Botany Vol. 66, No. 11 pp. 3391–3404	https://doi.org/10.1093/jxb/erv151
JournalArticle	Colombié el al (2015) Plant Physiology 180, 1709–1724	https://doi.org/10.1104/pp.19.00086
Collection	Access to data via cloud-like software	https://pmb-bordeaux.fr/fb/share/YnIKPeF9